Basic usage

The CLI command to build the image from the YAML configuration is

$ pipeline2app make xnat 'your-pipeline-config.yml'
Successfully built "FSL" image with ["fast"] commands

To build a suite of pipelines from a series of YAML files stored in a directory tree simply provide the root directory instead and Arcana will walk the sub-directories and attempt to build any YAML files it finds, e.g.

$ pipeline2app make xnat 'config-root-dir'
./config-root-dir/mri/neuro/fsl.yml: FSL [fast]
./config-root-dir/mri/neuro/mrtrix3.yml: MRtrix3 [dwi2fod, dwi2tensor, tckgen]
./config-root-dir/mri/neuro/freesurfer.yml: Freesurfer [recon-all]
...