Index

Symbols

--axes frametree-define command line option --cache frametree-store-add command line option --exclude frametree-define command line option --header frametree-add-source command line option --id-pattern frametree-define command line option --include frametree-define command line option --input frametree-apply command line option --loglevel frametree-derive command line option --no-overwrite frametree-apply command line option --no-regex frametree-add-source command line option --option frametree-store-add command line option --order frametree-add-source command line option --output frametree-apply command line option --overwrite frametree-apply command line option --parameter frametree-apply command line option --password frametree-store-add command line option frametree-store-refresh command line option --path frametree-add-sink command line option frametree-add-source command line option --plugin frametree-derive command line option --quality frametree-add-source command line option --race-condition-delay frametree-store-add command line option --regex frametree-add-source command line option --row-frequency frametree-add-sink command line option frametree-add-source command line option frametree-apply command line option

--salience frametree-add-sink command line option --server frametree-store-add command line option --sink frametree-apply command line option --source frametree-apply command line option --user frametree-store-add command line option frametree-store-refresh command line option --work frametree-derive command line option -c frametree-store-add command line option -d frametree-store-add command line option -f frametree-add-sink command line option frametree-add-source command line option frametree-apply command line option -h frametree-add-source command line option -i frametree-apply command line option -k frametree-apply command line option -o frametree-apply command line option frametree-store-add command line option -p frametree-add-sink command line option frametree-add-source command line option frametree-apply command line option frametree-store-add command line option frametree-store-refresh command line option -q frametree-add-source command line option -s frametree-add-sink command line option frametree-apply command line option frametree-store-add command line option -u frametree-store-add command line option frametree-store-refresh command line option -w frametree-derive command line option

_

__getitem__() (frametree.core.frameset.FrameSet method) (frametree.core.row.DataRow method)

A

add_sink() (frametree.core.frameset.FrameSet method) add_source() (frametree.core.frameset.FrameSet method) ADDRESS frametree-add-sink command line option frametree-add-source command line option frametree-apply command line option frametree-define command line option frametree-derive command line option frametree-missing-items command line option

apply() (frametree.core.frameset.FrameSet method) arbitrary (frametree.core.salience.ParameterSalience attribute) artefactual (frametree.core.quality.DataQuality attribute) Axes (class in frametree.core.axes)

B

Bids (class in frametree.bids)

C

check (frametree.core.salience.ParameterSalience attribute) CheckSalience (class in frametree.core.salience) CheckStatus (class in frametree.core.salience) Clinical (class in frametree.common) COLUMN_NAMES frametree-missing-items command line option

COLUMNS frametree-derive command line option ColumnSalience (class in frametree.core.salience) create_dataset() (frametree.core.store.Store method)

D

DataQuality (class in frametree.core.quality) DataRow (class in frametree.core.row) DATATYPE frametree-add-sink command line option frametree-add-source command line option debug (frametree.core.salience.CheckSalience attribute) (frametree.core.salience.ColumnSalience attribute) (frametree.core.salience.ParameterSalience attribute)

default() (frametree.core.quality.DataQuality class method) (frametree.core.salience.CheckSalience class method) (frametree.core.salience.CheckStatus class method) (frametree.core.salience.ColumnSalience class method) (frametree.core.salience.ParameterSalience class method) define_frameset() (frametree.core.store.Store method) dependent (frametree.core.salience.ParameterSalience attribute) derive() (frametree.core.frameset.FrameSet method)

F

failed (frametree.core.salience.CheckStatus attribute) FileSystem (class in frametree.common) FrameSet (class in frametree.core.frameset) frametree-add-sink command line option --path --row-frequency --salience -f -p -s ADDRESS DATATYPE NAME frametree-add-source command line option --header --no-regex --order --path --quality --regex --row-frequency -f -h -p -q ADDRESS DATATYPE NAME frametree-apply command line option --input --no-overwrite --output --overwrite --parameter --row-frequency --sink --source -f -i -k -o -p -s ADDRESS PIPELINE_NAME WORKFLOW_LOCATION

frametree-define command line option --axes --exclude --id-pattern --include ADDRESS HIERARCHY frametree-derive command line option --loglevel --plugin --work -w ADDRESS COLUMNS frametree-missing-items command line option ADDRESS COLUMN_NAMES frametree-store-add command line option --cache --option --password --race-condition-delay --server --user -c -d -o -p -s -u NAME TYPE frametree-store-refresh command line option --password --user -p -u NAME frametree-store-remove command line option NAME frametree-store-rename command line option NEW_NAME OLD_NAME

H

HIERARCHY frametree-define command line option

I

import_dataset() (frametree.core.store.Store method)

install_license() (frametree.core.frameset.FrameSet method) is_parent() (frametree.core.axes.Axes method)

L

load() (frametree.core.frameset.FrameSet class method) (frametree.core.store.Store class method)

N

NAME frametree-add-sink command line option frametree-add-source command line option frametree-store-add command line option frametree-store-refresh command line option frametree-store-remove command line option

NEW_NAME frametree-store-rename command line option noisy (frametree.core.quality.DataQuality attribute)

O

OLD_NAME frametree-store-rename command line option

P

ParameterSalience (class in frametree.core.salience) passed (frametree.core.salience.CheckStatus attribute) PIPELINE_NAME frametree-apply command line option potential (frametree.core.salience.CheckSalience attribute)

primary (frametree.core.salience.ColumnSalience attribute) probable_fail (frametree.core.salience.CheckStatus attribute) probable_pass (frametree.core.salience.CheckStatus attribute) prudent (frametree.core.salience.CheckSalience attribute) publication (frametree.core.salience.ColumnSalience attribute)

Q

qa (frametree.core.salience.ColumnSalience attribute)

questionable (frametree.core.quality.DataQuality attribute)

R

raw (frametree.core.salience.ColumnSalience attribute) recommended (frametree.core.salience.CheckSalience attribute) (frametree.core.salience.ParameterSalience attribute) remove() (frametree.core.store.Store class method)

required (frametree.core.salience.CheckSalience attribute) (frametree.core.salience.ParameterSalience attribute) row() (frametree.core.frameset.FrameSet method) rows() (frametree.core.frameset.FrameSet method)

S

Samples (class in frametree.common) save() (frametree.core.store.Store method) span() (frametree.core.axes.Axes method)

Store (class in frametree.core.store) strongly_recommended (frametree.core.salience.CheckSalience attribute) supplementary (frametree.core.salience.ColumnSalience attribute)

T

temp (frametree.core.salience.ColumnSalience attribute)

TYPE frametree-store-add command line option

U

unclear (frametree.core.salience.CheckStatus attribute) union() (frametree.core.axes.Axes class method)

unusable (frametree.core.quality.DataQuality attribute) usable (frametree.core.quality.DataQuality attribute)

W

WORKFLOW_LOCATION frametree-apply command line option

X

Xnat (class in frametree.xnat)

XnatViaCS (class in frametree.xnat)